One interactive figure · four static · two JSON inputs
The figures, and the data they are drawn from.
moat.html is the argument; the PNGs are the conventional views of the same result. Both JSON files are build inputs, kept so the figures can be regenerated rather than trusted.
moat.htmlThe Moat, self-contained and interactive: every sequence by its distance from the sihek, with the empty intervals inked instead of the data.166 KB
moat_data.jsonThe plot's input, joined by scripts/prep_data.py from the tree order, the distances and the taxonomy.20 KB
wiki_links.jsonEach taxon resolved against the Wikipedia API, recording whether the match was exact or fell back to the parent species.20 KB
fig1_todiramphus_tree.pngFigure 1. Maximum-likelihood tree of Todiramphus: the sihek's closest kin are not the birds it was once classified with.410 KB
fig2_family_tree.pngFigure 2. The family-level tree, with subfamilies marked — the sihek is a tree kingfisher.244 KB
fig3_divergence.pngFigure 3. Divergence from the sihek as a histogram and dot plot; the gap around it is empty, not sparse.218 KB
fig4_conservation_genomics.pngFigure 4. Runs of homozygosity and heterozygosity from the whole-genome read set, built in genomics/.212 KB
